Ussery, David W: search on Z-Library

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1

Dilated Blood and Lymphatic Microvessels, Angiogenesis, Increased Macrophages, and Adipocyte Hypertrophy in Lipedema Thigh Skin and Fat Tissue

AL-Ghadban, Sara, Cromer, Walter, Allen, Marisol, Ussery, Christopher, Badowski, Michael, Harris, David, Herbst, Karen L.

Journal:

Journal of Obesity

Year:

2019

Language:

english

File:

PDF, 4.59 MB

english, 2019

2

Darwin's Black Box: The Biochemical Challenge to Evolutionby Michael J. Behe

Review by: David Ussery

Journal:

Year:

1999

Language:

english

File:

PDF, 643 KB

english, 1999

3

A Classification of Possible Routes of Darwinian Evolution

RICHARD H THORNHILL, DAVID W USSERY

Journal:

Journal of Theoretical Biology

Year:

2000

Language:

english

File:

PDF, 98 KB

english, 2000

4

Analysis of intra-genomic GC content homogeneity within prokaryotes

Jon Bohlin, Lars Snipen, Simon P Hardy, Anja B Kristoffersen, Karin Lagesen, Torunn Dønsvik, Eystein Skjerve, David W Ussery

Journal:

Year:

2010

Language:

english

File:

PDF, 613 KB

english, 2010

5

The Importance of Virulence Prediction and Gene Networks in Microbial Risk Assessment

Wassenaar, Trudy M., Gamieldien, Junaid, Shatkin, JoAnne, Luber, Petra, Moyer, Nelson, Carpenter, Tom, Ussery, David W.

Journal:

Human and Ecological Risk Assessment An International Journal

Year:

2007

Language:

english

File:

PDF, 118 KB

english, 2007

6

Microbial taxonomy in the post-genomic era: Rebuilding from scratch?

Thompson, Cristiane C., Amaral, Gilda R., Campeão, Mariana, Edwards, Robert A., Polz, Martin F., Dutilh, Bas E., Ussery, David W., Sawabe, Tomoo, Swings, Jean, Thompson, Fabiano L.

Journal:

Archives of Microbiology

Year:

2015

Language:

english

File:

PDF, 589 KB

english, 2015

7

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)

Federhen, Scott, Rossello-Mora, Ramon, Klenk, Hans-Peter, Tindall, Brian J., Konstantinidis, Konstantinos T., Whitman, William B., Brown, Daniel, Labeda, David, Ussery, David, Garrity, George M., Colw

Journal:

Standards in Genomic Sciences

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

8

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species

Wassenaar, Trudy M., Jun, Se‐Ran, Robeson, Michael, Ussery, David W.

Journal:

MicrobiologyOpen

Year:

2019

Language:

english

File:

PDF, 1.16 MB

english, 2019

9

16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand

Kandel, Sangam, Sripiboon, Supaphen, Jenjaroenpun, Piroon, Ussery, David W., Nookaew, Intawat, Robeson, Michael S., Wongsurawat, Thidathip, Maresca, Julia A.

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 351 KB

2020

10

Bias of purine stretches in sequenced chromosomes

David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh

Journal:

Computers & Chemistry

Year:

2002

Language:

english

File:

PDF, 579 KB

english, 2002

11

Evaluation of potential regulatory elements identified as DNase I hypersensitive sites in the CFTR gene

Marios Phylactides, Rebecca Rowntree, Hugh Nuthall, David Ussery, Ann Wheeler, Ann Harris

Journal:

Year:

2002

Language:

english

File:

PDF, 308 KB

english, 2002

12

Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori

Faye M. Barnard, Michael F. Loughlin, Hernan P. Fainberg, Michael P. Messenger, David W. Ussery, Paul Williams, Peter J. Jenks

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 478 KB

english, 2004

13

Prediction of highly expressed genes in microbes based on chromatin accessibility

Hanni Willenbrock, David W Ussery

Journal:

BMC Molecular Biology

Year:

2007

Language:

english

File:

PDF, 493 KB

english, 2007

14

Natural genetic engineering: intelligence & design in evolution?

Journal:

Microbial Informatics and Experimentation

Year:

2011

Language:

english

File:

PDF, 1.08 MB

english, 2011

15

On the Origins of aVibrioSpecies

Tammi Vesth, Trudy M. Wassenaar, Peter F. Hallin, Lars Snipen, Karin Lagesen, David W. Ussery

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 667 KB

english, 2010

16

Comparison of 61 SequencedEscherichia coliGenomes

Oksana Lukjancenko, Trudy M. Wassenaar, David W. Ussery

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 558 KB

english, 2010

17

A Closer Look atBacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

Fredrik H. Karlsson, David W. Ussery, Jens Nielsen, Intawat Nookaew

Journal:

Microbial Ecology

Year:

2011

Language:

english

File:

PDF, 3.34 MB

english, 2011

18

TheSalmonella entericaPan-genome

Annika Jacobsen, Rene S. Hendriksen, Frank M. Aaresturp, David W. Ussery, Carsten Friis

Journal:

Microbial Ecology

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

19

Defining thePseudomonasGenus: Where Do We Draw the Line withAzotobacter?

Asli I. Özen, David W. Ussery

Journal:

Microbial Ecology

Year:

2012

Language:

english

File:

PDF, 2.49 MB

english, 2012

20

Comparative Genomics ofBifidobacterium,Lactobacillusand Related Probiotic Genera

Oksana Lukjancenko, David W. Ussery, Trudy M. Wassenaar

Journal:

Microbial Ecology

Year:

2012

Language:

english

File:

PDF, 1.49 MB

english, 2012

21

Transcriptomics and adaptive genomics of the asymptomatic bacteriuriaEscherichia colistrain 83972

Viktoria Hancock, Aswin S. Seshasayee, David W. Ussery, Nicholas M. Luscombe, Per Klemm

Journal:

Molecular Genetics and Genomics

Year:

2008

Language:

english

File:

PDF, 709 KB

english, 2008

22

The TNFα receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in cystic fibrosis

Frauke Stanke, Tim Becker, Harry Cuppens, Vinod Kumar, Jean-Jacques Cassiman, Silke Jansen, Dragica Radojkovic, Benny Siebert, Jennifer Yarden, David W. Ussery, Thomas F. Wienker, Burkhard Tümmler

Journal:

Year:

2006

Language:

english

File:

PDF, 469 KB

english, 2006

23

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries

Tim T. Binnewies, Yair Motro, Peter F. Hallin, Ole Lund, David Dunn, Tom La, David J. Hampson, Matthew Bellgard, Trudy M. Wassenaar, David W. Ussery

Journal:

Functional & Integrative Genomics

Year:

2006

Language:

english

File:

PDF, 827 KB

english, 2006

24

Comparative genomics of green sulfur bacteria

Colin Davenport, David W. Ussery, Burkhard Tümmler

Journal:

Photosynthesis Research

Year:

2010

Language:

english

File:

PDF, 914 KB

english, 2010

25

The σ54 regulon (sigmulon) of Pseudomonas putida

Ildefonso Cases, David W. Ussery, Víctor De Lorenzo

Journal:

Environmental Microbiology

Year:

2003

Language:

english

File:

PDF, 184 KB

english, 2003

26

Origin of replication in circular prokaryotic chromosomes

Peder Worning, Lars J. Jensen, Peter F. Hallin, Hans-Henrik Stærfeldt, David W. Ussery

Journal:

Environmental Microbiology

Year:

2006

Language:

english

File:

PDF, 731 KB

english, 2006

27

Systems biology: in the broadest sense of the word

David W. Ussery, Lars Juhl Jensen

Journal:

Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 126 KB

english, 2005

28

Global features of the Alcanivorax borkumensis SK2 genome

Oleg N. Reva, Peter F. Hallin, Hanni Willenbrock, Thomas Sicheritz-Ponten, Burkhard Tümmler, David W. Ussery

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

29

Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome

Tom Coenye, Pavel Drevinek, Eshwar Mahenthiralingam, Shiraz Ali Shah, Ryan T. Gill, Peter Vandamme, David W. Ussery

Journal:

FEMS Microbiology Letters

Year:

2007

Language:

english

File:

PDF, 1.12 MB

english, 2007

30

The genomic code: inferring Vibrionaceae niche specialization

Reen, F. Jerry, Almagro-Moreno, Salvador, Ussery, David, Boyd, E. Fidelma

Journal:

Nature Reviews Microbiology

Year:

2006

Language:

english

File:

PDF, 1.15 MB

english, 2006

31

Visualization of Pathogenicity Regions in Bacteria

Carsten Friis, Lars Juhl Jensen, David W. Ussery

Journal:

Year:

2000

Language:

english

File:

PDF, 100 KB

english, 2000

32

Differences in two-component signal transduction proteins among the genus Brucella: Implications for host preference and pathogenesis

José Luis Lavín, Tim T. Binnewies, Antonio G. Pisabarro, David W. Ussery, Juan M. García-Lobo, José A. Oguiza

Journal:

Veterinary Microbiology

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

33

On the total number of genes and their length distribution in complete microbial genomes

Marie Skovgaard, Lars Juhl Jensen, Søren Brunak, David Ussery, Anders Krogh

Journal:

Trends in Genetics

Year:

2001

Language:

english

File:

PDF, 43 KB

english, 2001

34

Strand misalignments lead to quasipalindrome correction

Vera van Noort, Peder Worning, David W. Ussery, William A. Rosche, Richard R. Sinden

Journal:

Trends in Genetics

Year:

2003

Language:

english

File:

PDF, 330 KB

english, 2003

35

Genomic comparisons ofBrucellaspp. and closely related bacteria using base compositional and proteome based methods

Jon Bohlin, Lars Snipen, Axel Cloeckaert, Karin Lagesen, David Ussery, Anja B Kristoffersen, Jacques Godfroid

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 5.35 MB

english, 2010

36

Genomic taxonomy of vibrios

Cristiane C Thompson, Carolina P Ana Vicente, Rangel C Souza, Ana Tereza R Vasconcelos, Tammi Vesth, Nelson Alves, David W Ussery, Tetsuya Iida, Fabiano L Thompson

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 2.70 MB

english, 2009

37

Microbial comparative pan-genomics using binomial mixture models

Lars Snipen, Trygve Almøy, David W Ussery

Journal:

Year:

2009

Language:

english

File:

PDF, 452 KB

english, 2009

38

Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes

Jon Bohlin, Simon P Hardy, David W Ussery

Journal:

Year:

2009

Language:

english

File:

PDF, 302 KB

english, 2009

39

Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering

Jon Bohlin, Eystein Skjerve, David W Ussery

Journal:

Year:

2009

Language:

english

File:

PDF, 1.50 MB

english, 2009

40

Analysis of two large functionally uncharacterized regions in theMethanopyrus kandleriAV19 genome

Lars Juhl Jensen, Marie Skovgaard, Thomas Sicheritz-Pontén, Merete Kjær Jørgensen, Christiane Lundegaard, Cavan Corinna Pedersen, Nanna Petersen, David Ussery

Journal:

Year:

2003

Language:

english

File:

PDF, 800 KB

english, 2003

41

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina

Mikko Arvas, Teemu Kivioja, Alex Mitchell, Markku Saloheimo, David Ussery, Merja Penttila, Stephen Oliver

Journal:

Year:

2007

Language:

english

File:

PDF, 1.41 MB

english, 2007

42

Comparative genomic analysis of two-component regulatory proteins inPseudomonas syringae

José L Lavín, Kristoffer Kiil, Ohiana Resano, David W Ussery, José A Oguiza

Journal:

Year:

2007

Language:

english

File:

PDF, 261 KB

english, 2007

43

Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes

Jon Bohlin, Eystein Skjerve, David W Ussery

Journal:

Year:

2008

Language:

english

File:

PDF, 753 KB

english, 2008

44

Molecular analysis of the emergence of pandemicVibrio parahaemolyticus

E Fidelma Boyd, Ana Luisa V Cohen, Lynn M Naughton, David W Ussery, Tim T Binnewies, O Colin Stine, Michelle A Parent

Journal:

BMC Microbiology

Year:

2008

Language:

english

File:

PDF, 752 KB

english, 2008

45

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium

Shane C. Dillon, Elena Espinosa, Karsten Hokamp, David W. Ussery, Josep Casadesús, Charles J. Dorman

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

46

A DNA structural atlas for Escherichia coli

Anders Gorm Pedersen, Lars Juhl Jensen, Søren Brunak, Hans-Henrik Stærfeldt, David W Ussery

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 879 KB

english, 2000

47

Appendix Estimation of superhelical density in Vivo from analysis of the level of cruciforms existing in living cells

Guoxing Zheng, David W. Ussery, Richard R. Sinden

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 813 KB

english, 1991

48

Analysis and prediction of gene splice sites in four Aspergillus genomes

Kai Wang, David Wayne Ussery, Søren Brunak

Journal:

Fungal Genetics and Biology

Year:

2009

Language:

english

File:

PDF, 448 KB

english, 2009

49

Opening the pan-genomics box

Timothy D Read, David W Ussery

Journal:

Current Opinion in Microbiology

Year:

2006

Language:

english

File:

PDF, 83 KB

english, 2006

50

Extracytoplasmic function sigma factors in Pseudomonas syringae

José A. Oguiza, Kristoffer Kiil, David W. Ussery

Journal:

Trends in Microbiology

Year:

2005

Language:

english

File:

PDF, 97 KB

english, 2005